read.celfile {affyio} | R Documentation |
This function reads the entire contents of a CEL file into an R list structure
read.celfile(filename,intensity.means.only=FALSE)
filename |
name of CEL file |
intensity.means.only |
If |
The list has four main items. HEADER, INTENSITY, MASKS, OUTLIERS. Note that INTENSITY is a list of three vectors MEAN, STDEV, NPIXELS. HEADER is also a list. Both of MASKS and OUTLIERS are matrices.
returns a list
structure. The exact contents may vary
depending on the file format of the CEL file
B. M. Bolstad <bmb@bmbolstad.com>