+ exec
+ rm -rf /rpmbuild
+ mkdir -p /rpmbuild
+ su -c 'rpmbuild -ba /builddir/build/SPECS/primer3.spec            --define "debug_package %{nil}"            --undefine _annotated_build            --define "_missing_doc_files_terminate_build %{nil}"            --define "_emacs_sitestartdir /usr/share/emacs/site-lisp/site-start.d"            --define "_emacs_sitelispdir /usr/share/emacs/site-lisp"            --nocheck   ' mockbuild
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SV91Nh
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf primer3-2.3.6
+ /usr/bin/tar -xof -
+ /usr/bin/gzip -dc /builddir/build/SOURCES/primer3-src-2.3.6.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd primer3-2.3.6
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ chmod -x src/Makefile src/Makefile.OSX src/dpal.c src/dpal.h src/format_output.c src/format_output.h src/gpl-2.0.txt src/humrep_and_simple.txt src/libprimer3.c src/libprimer3.h src/long_seq_tm_test_main.c src/ntdpal_main.c src/oligotm.c src/oligotm.h src/oligotm_main.c src/p3_seq_lib.c src/p3_seq_lib.h src/paranoid_tests.sh src/primer3_boulder_main.c src/primer3_config src/print_boulder.c src/print_boulder.h src/read_boulder.c src/read_boulder.h src/release_notes.txt src/thal.c src/thal.h src/thal_main.c
+ chmod +x src/primer3_config
+ sed -i -e 's|CFLAGS  = $(CC_OPTS) $(O_OPTS)|CFLAGS  = $(CC_OPTS) $(O_OPTS) $(INIT_CFLAGS)|' src/Makefile
+ sed -i 's/\r//' primer3web_v0_4_0_default_settings.txt
+ sed -i -e 's|/opt/primer3_config|/etc/primer3_config|' src/release_notes.txt src/thal_main.c src/primer3_boulder_main.c primer3_manual.htm
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5KXpbg
+ umask 022
+ cd /builddir/build/BUILD
+ cd primer3-2.3.6
+ cd src
+ export 'INIT_CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 '
+ INIT_CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 '
+ make -j4
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1   primer3_boulder_main.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1   -o format_output.o format_output.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1   -o read_boulder.o read_boulder.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1   -o print_boulder.o print_boulder.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -Wno-deprecated  -o libprimer3.o libprimer3.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -o p3_seq_lib.o p3_seq_lib.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1   -o dpal_primer.o dpal.c
g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -ffloat-store  -o thal_primer.o thal.c
dpal.c: In function 'void print_align(const unsigned char*, const unsigned char*, int (*)[1600][3], int, int, const dpal_args*)':
dpal.c:1036:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
     for(i=j;i<j+70;i++) fprintf(stderr, "%c",sy[i]); fprintf(stderr,"\n");
     ^~~
dpal.c:1036:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
     for(i=j;i<j+70;i++) fprintf(stderr, "%c",sy[i]); fprintf(stderr,"\n");
                                                      ^~~~~~~
thal.c: In function 'void thal(const unsigned char*, const unsigned char*, const thal_args*, thal_results*)':
thal.c:426:16: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
    if ('\0' == oligo_f) {
                ^~~~~~~
thal.c:431:16: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
    if ('\0' == oligo_r) {
                ^~~~~~~
thal.c: In function 'void tableStartATS(double, double (*)[5])':
thal.c:1198:4: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
    for (i = 0; i < 5; ++i)
    ^~~
thal.c:1201:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
      atpS[0][3] = atpS[3][0] = atp_value;
      ^~~~
thal.c: In function 'void tableStartATH(double, double (*)[5])':
thal.c:1210:4: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
    for (i = 0; i < 5; ++i)
    ^~~
thal.c:1214:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
      atpH[0][3] = atpH[3][0] = atp_value;
      ^~~~
make: *** [Makefile:192: thal_primer.o] Error 1
make: *** Waiting for unfinished jobs....
error: Bad exit status from /var/tmp/rpm-tmp.5KXpbg (%build)


RPM build errors:
    Bad exit status from /var/tmp/rpm-tmp.5KXpbg (%build)
++ cleanup
++ set +e
++ sync
++ sleep 5
++ sync
++ poweroff
Terminated
+++ cleanup
+++ set +e
+++ sync
Terminated
++++ cleanup
++++ set +e
++++ sync
++++ sleep 5
++++ sync
++++ poweroff