VTK
vtkNewickTreeReader.h
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1 /*=========================================================================
2 
3  Program: Visualization Toolkit
4  Module: vtkNewickTreeReader.h
5 
6  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7  All rights reserved.
8  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9 
10  This software is distributed WITHOUT ANY WARRANTY; without even
11  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12  PURPOSE. See the above copyright notice for more information.
13 
14 =========================================================================*/
34 #ifndef vtkNewickTreeReader_h
35 #define vtkNewickTreeReader_h
36 
37 #include "vtkIOInfovisModule.h" // For export macro
38 #include "vtkDataReader.h"
39 
40 class vtkDoubleArray;
42 class vtkStringArray;
43 class vtkTree;
44 
45 class VTKIOINFOVIS_EXPORT vtkNewickTreeReader : public vtkDataReader
46 {
47 public:
50  void PrintSelf(ostream& os, vtkIndent indent) override;
51 
53 
57  vtkTree *GetOutput(int idx);
58  void SetOutput(vtkTree *output);
59  int ReadNewickTree(const char * buffer, vtkTree & tree);
61 
65  int ReadMeshSimple(const std::string& fname,
66  vtkDataObject* output) override;
67 
68 protected:
71 
73  void CountNodes(const char * buffer, vtkIdType *numNodes);
75  vtkDoubleArray *weights, vtkStringArray *names, vtkIdType parent);
76 private:
78  void operator=(const vtkNewickTreeReader&) = delete;
79 };
80 
81 #endif
vtkMutableDirectedGraph
An editable directed graph.
Definition: vtkMutableDirectedGraph.h:52
vtkIdType
int vtkIdType
Definition: vtkType.h:347
vtkDataReader
helper superclass for objects that read vtk data files
Definition: vtkDataReader.h:52
vtkNewickTreeReader::ReadNewickTree
int ReadNewickTree(const char *buffer, vtkTree &tree)
vtkTree
A rooted tree data structure.
Definition: vtkTree.h:61
vtkDataReader.h
vtkIndent
a simple class to control print indentation
Definition: vtkIndent.h:40
vtkNewickTreeReader::~vtkNewickTreeReader
~vtkNewickTreeReader() override
vtkNewickTreeReader
read vtkTree from Newick formatted file
Definition: vtkNewickTreeReader.h:46
vtkNewickTreeReader::FillOutputPortInformation
int FillOutputPortInformation(int, vtkInformation *) override
Fill the output port information objects for this algorithm.
vtkInformation
Store vtkAlgorithm input/output information.
Definition: vtkInformation.h:87
vtkX3D::string
@ string
Definition: vtkX3D.h:490
vtkNewickTreeReader::GetOutput
vtkTree * GetOutput()
Get the output of this reader.
vtkNewickTreeReader::GetOutput
vtkTree * GetOutput(int idx)
vtkNewickTreeReader::New
static vtkNewickTreeReader * New()
vtkNewickTreeReader::vtkNewickTreeReader
vtkNewickTreeReader()
vtkNewickTreeReader::BuildTree
vtkIdType BuildTree(char *buffer, vtkMutableDirectedGraph *g, vtkDoubleArray *weights, vtkStringArray *names, vtkIdType parent)
vtkStringArray
a vtkAbstractArray subclass for strings
Definition: vtkStringArray.h:43
vtkDoubleArray
dynamic, self-adjusting array of double
Definition: vtkDoubleArray.h:42
vtkNewickTreeReader::ReadMeshSimple
int ReadMeshSimple(const std::string &fname, vtkDataObject *output) override
Actual reading happens here.
vtkDataObject
general representation of visualization data
Definition: vtkDataObject.h:65
vtkNewickTreeReader::PrintSelf
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
vtkNewickTreeReader::SetOutput
void SetOutput(vtkTree *output)
vtkNewickTreeReader::CountNodes
void CountNodes(const char *buffer, vtkIdType *numNodes)