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HighResPrecursorMassCorrector

Corrects the precursor mz of high resolution data.

pot. predecessor tools $ \longrightarrow $ HighResPrecursorMassCorrector $ \longrightarrow $ pot. successor tools
PeakPickerHiRes MascotAdapter (or other ID engines)

This tool performs precursor mz correction on picked (=centroided) high resolution data.

The command line parameters of this tool are:

HighResPrecursorMassCorrector -- Corrects the precursor mz determined by the instrument software.
Version: 2.0.0 May 29 2015, 13:57:09, Revision: GIT-NOTFOUND

Usage:
  HighResPrecursorMassCorrector <options>

Options (mandatory options marked with '*'):
  -in <file>*        Input file (centroided data) (valid formats: 'mzML')
  -out <file>*       Output file (valid formats: 'mzML')
  -out_csv <file>    Optional csv output file containing columns: precursor rt, uncorrected mz, corrected 
                     mz, delta mz
                     (valid formats: 'csv')
                     
Common TOPP options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+HighResPrecursorMassCorrectorCorrects the precursor mz determined by the instrument software.
version2.0.0 Version of the tool that generated this parameters file.
++1Instance '1' section for 'HighResPrecursorMassCorrector'
in input file (centroided data)input file*.mzML
out output fileoutput file*.mzML
out_csv Optional csv output file containing columns: precursor rt, uncorrected mz, corrected mz, delta mz
output file*.csv
log Name of log file (created only when specified)
debug0 Sets the debug level
threads1 Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse Disables progress logging to command linetrue,false
forcefalse Overwrite tool specific checks.true,false
testfalse Enables the test mode (needed for internal use only)true,false

OpenMS / TOPP release 2.0.0 Documentation generated on Fri May 29 2015 17:20:34 using doxygen 1.8.9.1