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- a -
A :
GaussFitter::GaussFitResult
a :
GumbelDistributionFitter::GumbelDistributionFitResult
a_ :
CubicSpline2d
A_ :
EGHModel
,
LocalLinearMap
a_ :
QuadraticRegression
,
TOFCalibration
a_ion_losses_cd_ :
PILISModel
a_ion_losses_cr_ :
PILISModel
AA :
MS2Info
aa_after_ :
PeptideEvidence
aa_before_ :
PeptideEvidence
aa_to_index_ :
SvmTheoreticalSpectrumGenerator
aa_to_weight_ :
CompNovoIdentificationBase
aa_weight_ :
PILISIdentification
AAAfter :
PeptideProteinMatchInformation
AABefore :
PeptideProteinMatchInformation
aamass_ :
GoodDiffFilter
AAname :
EnzymaticDigestion::BindingSite
abort_reasons_ :
FeatureFinderAlgorithmPicked
aborts_ :
FeatureFinderAlgorithmPicked
abs_prec_error :
RNPxlReportRow
absdiff_max_ :
FuzzyStringComparator
absdiff_max_allowed_ :
FuzzyStringComparator
abundance :
IMSIsotopeDistribution::Peak
abundances :
PeptideAndProteinQuant::PeptideData
,
PeptideAndProteinQuant::ProteinData
ABUNDANCES_SUM_ERROR :
IMSIsotopeDistribution
AC :
MS2Info
ac_mode_ :
IonDetectorVisualizer
acc_ :
MassAnalyzerVisualizer
accession :
CVTerm::Unit
,
MzIdentMLDOMHandler::DBSequence
,
SemanticValidator::CVTerm
,
MzTabPeptideSectionRow
,
MzTabProteinSectionRow
,
MzTabPSMSectionRow
accession_ :
CVMappingTerm
,
CVTerm
,
MzTabParameter
,
PeptideEvidence
,
ProteinHit
accession_att_ :
SemanticValidator
accession_to_id_ :
ConsensusXMLFile
,
FeatureXMLFile
accessions :
PeptideAndProteinQuant::PeptideData
,
ProteinIdentification::ProteinGroup
,
RNPxlReportRow
accessions_ :
PSProteinInference
accuracy_ :
MassAnalyzer
acquisition_info_ :
ChromatogramSettings
,
SpectrumSettings
acquisition_mode_ :
IonDetector
acquisitioninfo_method_ :
AcquisitionInfoVisualizer
acquisitionnumber_ :
AcquisitionVisualizer
act_cons_element_ :
ConsensusXMLFile
action_mode_ :
SpectrumCanvas
,
TOPPASScene
actions_ :
DataProcessingVisualizer
activation_energy_ :
Precursor
,
PrecursorVisualizer
activation_methods_ :
Precursor
,
PrecursorVisualizer
active :
ItraqConstants::ChannelInfo
actual_aa_sequences_ :
PepXMLFileMascot
actual_charge_ :
XTandemXMLFile
actual_compound_ :
TraMLHandler
actual_configuration_ :
TraMLHandler
actual_contact_ :
TraMLHandler
actual_id_ :
XTandemXMLFile
actual_instrument_ :
TraMLHandler
actual_intermediate_products_ :
TraMLHandler
actual_interpretation_ :
TraMLHandler
actual_mod_site_ :
OMSSAXMLFile
actual_mod_type_ :
OMSSAXMLFile
actual_modifications_ :
PepXMLFileMascot
actual_note_ :
XTandemInfileXMLHandler
actual_pep_ :
EdwardsLippertIterator
,
TrypticIterator
actual_peptide_ :
MzIdentMLHandler
,
TraMLHandler
actual_peptide_evidence_ :
MascotXMLHandler
,
OMSSAXMLFile
actual_peptide_evidences_ :
OMSSAXMLFile
actual_peptide_hit_ :
MascotXMLHandler
,
OMSSAXMLFile
actual_peptide_id_ :
OMSSAXMLFile
actual_prediction_ :
TraMLHandler
actual_product_ :
TraMLHandler
actual_protein_ :
MzIdentMLHandler
,
TraMLHandler
actual_protein_hit_ :
MascotXMLHandler
,
OMSSAXMLFile
actual_protein_id_ :
OMSSAXMLFile
,
XTandemXMLFile
actual_publication_ :
TraMLHandler
actual_query_ :
MascotXMLHandler
actual_rt_ :
TraMLHandler
actual_rule_ :
CVMappingFile
actual_seq_ :
FastaIterator
actual_sequence_ :
PepXMLFileMascot
actual_software_ :
TraMLHandler
actual_sourcefile_ :
TraMLHandler
actual_start_ :
XTandemXMLFile
actual_stop_ :
XTandemXMLFile
actual_target_ :
TraMLHandler
actual_title_ :
MascotXMLHandler
,
PepXMLFileMascot
actual_transition_ :
TraMLHandler
actual_validation_ :
TraMLHandler
ADC_sampling_frequency_ :
IonDetector
add_2d_context_ :
TOPPViewBase
add_dataprocessing_ :
MSDataWritingConsumer
add_eluent_button_ :
GradientVisualizer
add_timepoint_button_ :
GradientVisualizer
add_up_spectra_ :
MRMFeatureFinderScoring
,
OpenSwathScoring
addbutton_ :
MetaInfoVisualizer
additional_dataprocessing_ :
MSDataWritingConsumer
address_ :
ContactPerson
,
ContactPersonVisualizer
adduct_base_ :
MassExplainer
advanced :
ParameterInformation
advanced_mode_ :
ParamEditor
affected_amino_acids_ :
Modification
affiliation :
MzTabContactMetaData
aligned_peaks_indices_ :
Spectrum1DCanvas
aligned_peaks_mz_delta_ :
Spectrum1DCanvas
alignment_ :
AxisWidget
ALIGNMENT_ERROR :
LCMS
alignment_error_down :
SHFeature
alignment_error_up :
SHFeature
alignment_layer_1_ :
Spectrum1DCanvas
alignment_layer_2_ :
Spectrum1DCanvas
alignment_score_ :
Spectrum1DCanvas
allow_children_ :
CVMappingTerm
allow_isotope_error_ :
XTandemInfile
allow_output_recycling_ :
TOPPASVertex
allow_short_numbers_ :
AxisWidget
allowed_threads_ :
TOPPASScene
alphabet_ :
IntegerMassDecomposer< ValueType, DecompositionValueType >
,
MassDecompositionAlgorithm
alphabet_masses_ :
Weights
always_append_data_ :
PeakFileOptions
ambig_features :
PeptideAndProteinQuant::Statistics
ambiguity_members :
MzTabProteinSectionRow
aminoacid :
PepXMLFile::AminoAcidModification
amount_ :
Adduct
analysis_summary_ :
MSQuantifications
,
PepXMLFile
analyzer :
MzTabInstrumentMetaData
anchorPoints_ :
MapAlignmentAlgorithmSpectrumAlignment
Annotation :
TransitionTSVReader::TSVTransition
annotations_ :
GridFeature
,
QTCluster
annotations_1d :
LayerData
APEX :
LCElutionPeak
apex_peak_intensity :
SHFeature
apex_rt_ :
EGHModel
,
EGHTraceFitter
apexMS1Signal :
FeatureLCProfile
apexScan :
MS2ConsensusSpectrum
arch :
OpenMSOSInfo
area :
PeakShape
arg_map_ :
ToolsDialog
arg_param_ :
ToolsDialog
,
TOPPASToolConfigDialog
args :
TOPPASScene::TOPPProcess
argument :
ParameterInformation
as_map_ :
MzIdentMLDOMHandler
AScore :
ProbablePhosphoSites
assay :
MzTabMetaData
assay_refs :
MzTabStudyVariableMetaData
assays_ :
MSQuantifications
at_ :
QcMLFile
atomic_number_ :
Element
atomic_numbers_ :
ElementDB
ats_ :
QcMLFile
ATTR_name :
MzIdentMLDOMHandler
auto_max_percentile_ :
SignalToNoiseEstimatorMeanIterative< Container >
,
SignalToNoiseEstimatorMedian< Container >
auto_max_stdev_Factor_ :
SignalToNoiseEstimatorMeanIterative< Container >
,
SignalToNoiseEstimatorMedian< Container >
auto_mode_ :
SignalToNoiseEstimatorMeanIterative< Container >
,
SignalToNoiseEstimatorMedian< Container >
av_MZ_spacing_ :
IsotopeWaveletTransform< PeakType >
average_mass_ :
ResidueModification
average_weight_ :
Element
,
Residue
averagine_ :
ExtendedIsotopeModel
,
IsotopeModel
,
IsotopeWavelet
averagine_similarity_ :
MultiplexFiltering
averagine_similarity_scaling_ :
MultiplexFiltering
avg :
LayerStatisticsDialog::MetaStatsValue_
avg_charge_ :
LayerStatisticsDialog
avg_elements_ :
LayerStatisticsDialog
avg_intensity_ :
LayerStatisticsDialog
avg_mass_delta :
Peptide::Modification
avg_quality_ :
LayerStatisticsDialog
avge_mass_ :
UnimodXMLHandler
axes_ :
Spectrum3DOpenGLCanvas
axes_ticks_ :
Spectrum3DOpenGLCanvas
OpenMS / TOPP release 2.0.0
Documentation generated on Fri May 29 2015 17:21:28 using doxygen 1.8.9.1