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MSDataWritingConsumer Member List

This is the complete list of members for MSDataWritingConsumer, including all inherited members.

ActionMode enum nameXMLHandler
add_dataprocessing_MSDataWritingConsumerprotected
addDataProcessing(DataProcessing d)MSDataWritingConsumerinlinevirtual
additional_dataprocessing_MSDataWritingConsumerprotected
asBool_(const String &in)XMLHandlerinlineprotected
asDateTime_(String date_string)XMLHandlerinlineprotected
asDouble_(const String &in)XMLHandlerinlineprotected
asFloat_(const String &in)XMLHandlerinlineprotected
asInt_(const String &in)XMLHandlerinlineprotected
asInt_(const XMLCh *in)XMLHandlerinlineprotected
asUInt_(const String &in)XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
BinaryData typedefMzMLHandler< MSExperiment<> >protected
cexp_MzMLHandler< MSExperiment<> >protected
characters(const XMLCh *const chars, const XMLSize_t length)MzMLHandler< MSExperiment<> >virtual
chromatogram_MzMLHandler< MSExperiment<> >protected
chromatogram_countMzMLHandler< MSExperiment<> >protected
chromatogram_data_MzMLHandler< MSExperiment<> >protected
ChromatogramPeakType typedefMzMLHandler< MSExperiment<> >protected
chromatograms_expected_MSDataWritingConsumerprotected
chromatograms_offsetsMzMLHandler< MSExperiment<> >protected
chromatograms_written_MSDataWritingConsumerprotected
ChromatogramType typedefMSDataWritingConsumer
consumeChromatogram(ChromatogramType &c)MSDataWritingConsumerinlinevirtual
IMSDataConsumer< MSExperiment<> >::consumeChromatogram(ChromatogramType &)=0IMSDataConsumer< MSExperiment<> >pure virtual
consumer_MzMLHandler< MSExperiment<> >protected
consumeSpectrum(SpectrumType &s)MSDataWritingConsumerinlinevirtual
IMSDataConsumer< MSExperiment<> >::consumeSpectrum(SpectrumType &s)=0IMSDataConsumer< MSExperiment<> >pure virtual
current_id_MzMLHandler< MSExperiment<> >protected
cv_MzMLHandler< MSExperiment<> >protected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
data_MzMLHandler< MSExperiment<> >protected
decoder_MzMLHandler< MSExperiment<> >protected
default_array_length_MzMLHandler< MSExperiment<> >protected
default_processing_MzMLHandler< MSExperiment<> >protected
doCleanup_()MSDataWritingConsumerinlineprivatevirtual
dps_MSDataWritingConsumerprotected
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname)MzMLHandler< MSExperiment<> >virtual
equal_(const XMLCh *a, const XMLCh *b) const XMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception)XMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
exp_MzMLHandler< MSExperiment<> >protected
fatalError(const xercesc::SAXParseException &exception)XMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
file_XMLHandlerprotected
fillChromatogramData_()MzMLHandler< MSExperiment<> >protected
getChildWithName_(const String &parent_accession, const String &name) constMzMLHandler< MSExperiment<> >protected
getCounts(Size &spectra_counts, Size &chromatogram_counts)MzMLHandler< MSExperiment<> >inline
getNrChromatogramsWritten()MSDataWritingConsumerinlinevirtual
getNrSpectraWritten()MSDataWritingConsumerinlinevirtual
getOptions()MzMLHandler< MSExperiment<> >inline
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession="")MzMLHandler< MSExperiment<> >protected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value)MzMLHandler< MSExperiment<> >protected
in_spectrum_list_MzMLHandler< MSExperiment<> >protected
instruments_MzMLHandler< MSExperiment<> >protected
LOAD enum valueXMLHandler
logger_MzMLHandler< MSExperiment<> >protected
mapping_MzMLHandler< MSExperiment<> >protected
MapType typedefMSDataWritingConsumer
MSDataWritingConsumer(String filename)MSDataWritingConsumerinlineexplicit
MzMLHandler(MSExperiment<> &exp, const String &filename, const String &version, ProgressLogger &logger)MzMLHandler< MSExperiment<> >inline
MzMLHandler(const MSExperiment<> &exp, const String &filename, const String &version, const ProgressLogger &logger)MzMLHandler< MSExperiment<> >inline
ofs_MSDataWritingConsumerprotected
open_tags_XMLHandlerprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
options_MzMLHandler< MSExperiment<> >protected
PeakType typedefMzMLHandler< MSExperiment<> >protected
populateChromatogramsWithData()MzMLHandler< MSExperiment<> >inlineprotected
populateChromatogramsWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &default_arr_length, const PeakFileOptions &peak_file_options, ChromatogramType &inp_chromatogram)MzMLHandler< MSExperiment<> >inlineprotected
populateSpectraWithData()MzMLHandler< MSExperiment<> >inlineprotected
populateSpectraWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &default_arr_length, const PeakFileOptions &peak_file_options, SpectrumType &spectrum)MzMLHandler< MSExperiment<> >inlineprotected
processChromatogram_(ChromatogramType &c)=0MSDataWritingConsumerprivatepure virtual
processing_MzMLHandler< MSExperiment<> >protected
processSpectrum_(SpectrumType &s)=0MSDataWritingConsumerprivatepure virtual
ref_param_MzMLHandler< MSExperiment<> >protected
reset()XMLHandler
rt_set_MzMLHandler< MSExperiment<> >protected
samples_MzMLHandler< MSExperiment<> >protected
scan_countMzMLHandler< MSExperiment<> >protected
selected_ion_count_MzMLHandler< MSExperiment<> >protected
setExpectedSize(Size expectedSpectra, Size expectedChromatograms)MSDataWritingConsumerinlinevirtual
setExperimentalSettings(const ExperimentalSettings &exp)MSDataWritingConsumerinlinevirtual
setMSDataConsumer(Interfaces::IMSDataConsumer< MSExperiment<> > *consumer)MzMLHandler< MSExperiment<> >inline
setOptions(const PeakFileOptions &opt)MzMLHandler< MSExperiment<> >inline
settings_MSDataWritingConsumerprotected
skip_chromatogram_MzMLHandler< MSExperiment<> >protected
skip_spectrum_MzMLHandler< MSExperiment<> >protected
sm_XMLHandlerprotected
software_MzMLHandler< MSExperiment<> >protected
source_files_MzMLHandler< MSExperiment<> >protected
spec_MzMLHandler< MSExperiment<> >protected
spectra_expected_MSDataWritingConsumerprotected
spectra_offsetsMzMLHandler< MSExperiment<> >protected
spectra_written_MSDataWritingConsumerprotected
spectrum_data_MzMLHandler< MSExperiment<> >protected
SpectrumType typedefMSDataWritingConsumer
started_writing_MSDataWritingConsumerprotected
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)MzMLHandler< MSExperiment<> >virtual
STORE enum valueXMLHandler
validateCV_(const ControlledVocabulary::CVTerm &c, const String &path, const Internal::MzMLValidator &validator) constMzMLHandler< MSExperiment<> >protected
validator_MSDataWritingConsumerprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception)XMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
writeBinaryDataArray(std::ostream &os, const PeakFileOptions &pf_options_, std::vector< DataType > data_to_encode, bool is32bit, String array_type)MzMLHandler< MSExperiment<> >inlineprotected
writeChromatogram_(std::ostream &os, const ChromatogramType &chromatogram, Size c, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writeContainerData(std::ostream &os, const PeakFileOptions &pf_options_, const ContainerT &container, String array_type)MzMLHandler< MSExperiment<> >inlineprotected
writeCV_(const ControlledVocabulary::CVTerm &c, const DataValue &metaValue) constMzMLHandler< MSExperiment<> >protected
writeDataProcessing_(std::ostream &os, const String &id, const std::vector< DataProcessing > &dps, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writeHeader_(std::ostream &os, const MSExperiment<> &exp, std::vector< std::vector< DataProcessing > > &dps, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writePrecursor_(std::ostream &os, const Precursor &precursor, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writeProduct_(std::ostream &os, const Product &product, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writeSoftware_(std::ostream &os, const String &id, const Software &software, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writeSourceFile_(std::ostream &os, const String &id, const SourceFile &software, Internal::MzMLValidator &validator)MzMLHandler< MSExperiment<> >protected
writeSpectrum_(std::ostream &os, const SpectrumType &spec, Size s, Internal::MzMLValidator &validator, bool renew_native_ids, std::vector< std::vector< DataProcessing > > &dps)MzMLHandler< MSExperiment<> >protected
writeTo(std::ostream &os)MzMLHandler< MSExperiment<> >virtual
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent, String path, Internal::MzMLValidator &validator) constMzMLHandler< MSExperiment<> >protected
OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const XMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
writing_chromatograms_MSDataWritingConsumerprotected
writing_spectra_MSDataWritingConsumerprotected
XMLHandler(const String &filename, const String &version)XMLHandler
~IMSDataConsumer()IMSDataConsumer< MSExperiment<> >inlinevirtual
~MSDataWritingConsumer()MSDataWritingConsumerinlinevirtual
~MzMLHandler()MzMLHandler< MSExperiment<> >inlinevirtual
~XMLHandler()XMLHandlervirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Fri May 29 2015 17:20:40 using doxygen 1.8.9.1