CMD enum value | ProgressLogger | |
copyBatchTransitions_(const std::vector< OpenSwath::LightPeptide > &used_peptides, const std::vector< OpenSwath::LightTransition > &all_transitions, std::vector< OpenSwath::LightTransition > &output) | OpenSwathWorkflow | inlineprivate |
current_logger_ | ProgressLogger | mutableprotected |
endProgress() const | ProgressLogger | |
getLogType() const | ProgressLogger | |
GUI enum value | ProgressLogger | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
ms1_map_ | OpenSwathWorkflow | private |
NONE enum value | ProgressLogger | |
OpenSwathWorkflow(bool use_ms1_traces) | OpenSwathWorkflow | inlineexplicit |
operator=(const ProgressLogger &other) | ProgressLogger | |
performExtraction(const std::vector< OpenSwath::SwathMap > &swath_maps, const TransformationDescription trafo, const ChromExtractParams &cp, const Param &feature_finder_param, const OpenSwath::LightTargetedExperiment &transition_exp, FeatureMap &out_featureFile, bool store_features, OpenSwathTSVWriter &tsv_writer, Interfaces::IMSDataConsumer<> *chromConsumer, int batchSize) | OpenSwathWorkflow | inline |
performRTNormalization(const OpenMS::TargetedExperiment &irt_transitions, const std::vector< OpenSwath::SwathMap > &swath_maps, double min_rsq, double min_coverage, const Param &feature_finder_param, const ChromExtractParams &cp_irt, Size debug_level) | OpenSwathWorkflow | inline |
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ChromatogramExtractorAlgorithm::ExtractionCoordinates > &coordinates, OpenSwath::LightTargetedExperiment &transition_exp_used, const double rt_extraction_window, const bool ms1) const | OpenSwathWorkflow | inlineprivate |
prepare_coordinates_wrap(std::vector< OpenSwath::ChromatogramPtr > &chrom_list, std::vector< ChromatogramExtractorAlgorithm::ExtractionCoordinates > &coordinates, OpenSwath::LightTargetedExperiment &transition_exp_used, const bool ms1, const TransformationDescription trafo_inverse, const ChromExtractParams &cp) const | OpenSwathWorkflow | inlineprivate |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
RTNormalization(TargetedExperiment transition_exp_, std::vector< OpenMS::MSChromatogram<> > chromatograms, double min_rsq, double min_coverage, Param feature_finder_param) | OpenSwathWorkflow | inlineprivate |
scoreAllChromatograms(const OpenSwath::SpectrumAccessPtr input, const OpenSwath::SpectrumAccessPtr swath_map, OpenSwath::LightTargetedExperiment &transition_exp, const Param &feature_finder_param, TransformationDescription trafo, const double rt_extraction_window, FeatureMap &output, OpenSwathTSVWriter &tsv_writer, std::map< std::string, OpenSwath::ChromatogramPtr > &ms1_chromatograms) | OpenSwathWorkflow | inlineprivate |
selectChrom_(const MSChromatogram< ChromatogramPeak > &chromatogram_old, MSSpectrum< ChromatogramPeak > &chromatogram, double rt_extraction_window, double center_rt) | OpenSwathWorkflow | inlineprivate |
selectPeptidesForBatch_(const OpenSwath::LightTargetedExperiment &transition_exp_used_all, OpenSwath::LightTargetedExperiment &transition_exp_used, int batch_size, size_t j) | OpenSwathWorkflow | inlineprivate |
setLogType(LogType type) const | ProgressLogger | |
setProgress(SignedSize value) const | ProgressLogger | |
simpleExtractChromatograms(const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenMS::TargetedExperiment &irt_transitions, std::vector< OpenMS::MSChromatogram<> > &chromatograms, const ChromExtractParams &cp) | OpenSwathWorkflow | inlineprivate |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
type_ | ProgressLogger | mutableprotected |
use_ms1_traces_ | OpenSwathWorkflow | private |
~ProgressLogger() | ProgressLogger | |