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MockObjects.h
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34 
35 #ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
36 #define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
37 
40 
41 #include <boost/shared_ptr.hpp>
42 #include <map>
43 #include <vector>
44 
45 namespace OpenSwath
46 {
47 
52  public OpenSwath::IFeature
53  {
54 public:
55 
56  MockFeature();
57 
58  ~MockFeature();
59 
60  void getRT(std::vector<double>& rt);
61 
62  void getIntensity(std::vector<double>& intens);
63 
64  float getIntensity();
65 
66  double getRT();
67 
68  std::vector<double> m_rt_vec;
69  std::vector<double> m_intensity_vec;
70  float m_intensity;
71  double m_rt;
72  };
73 
79  {
80 public:
81 
83 
84  ~MockMRMFeature();
85 
86  boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID);
87 
88  boost::shared_ptr<OpenSwath::IFeature> getPrecursorFeature(std::string nativeID);
89 
90  std::vector<std::string> getPrecursorIDs() const;
91 
92  float getIntensity();
93 
94  double getRT();
95 
96  size_t size();
97 
98  std::map<std::string, boost::shared_ptr<MockFeature> > m_features;
99  std::map<std::string, boost::shared_ptr<MockFeature> > m_precursor_features;
100  float m_intensity;
101  double m_rt;
102  };
103 
109  {
110 public:
111 
113 
115 
116  std::size_t size();
117 
118  std::vector<std::string> getNativeIDs();
119 
120  void getLibraryIntensities(std::vector<double>& intensities);
121 
122  std::size_t m_size;
123  std::vector<std::string> m_native_ids;
124  std::vector<double> m_library_intensities;
125  };
126 
127 
133  {
134 public:
136 
137  double getValueAtRT(double /* RT */);
138 
139  double m_sn_value;
140  };
141 
142 } //end namespace OpenMS
143 
144 #endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
std::vector< double > m_intensity_vec
Definition: MockObjects.h:69
std::vector< std::string > m_native_ids
Definition: MockObjects.h:123
Mock object implementing IMRMFeature.
Definition: MockObjects.h:77
std::map< std::string, boost::shared_ptr< MockFeature > > m_precursor_features
Definition: MockObjects.h:99
Mock object implementing IFeature.
Definition: MockObjects.h:51
Definition: ITransition.h:68
float m_intensity
Definition: MockObjects.h:70
double m_sn_value
Definition: MockObjects.h:139
std::map< std::string, boost::shared_ptr< MockFeature > > m_features
Definition: MockObjects.h:98
Definition: ITransition.h:46
std::vector< double > m_library_intensities
Definition: MockObjects.h:124
Definition: MRMScoring.h:51
std::size_t m_size
Definition: MockObjects.h:122
double m_rt
Definition: MockObjects.h:71
Mock object implementing ITransitionGroup.
Definition: MockObjects.h:107
float m_intensity
Definition: MockObjects.h:100
Definition: ITransition.h:56
#define OPENSWATHALGO_DLLAPI
Definition: OpenSwathAlgoConfig.h:15
std::vector< double > m_rt_vec
Definition: MockObjects.h:68
double m_rt
Definition: MockObjects.h:101
Mock object implementing ISignalToNoise.
Definition: MockObjects.h:131
Definition: ITransition.h:76

OpenMS / TOPP release 2.0.0 Documentation generated on Fri May 29 2015 17:20:26 using doxygen 1.8.9.1