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AASequence Member List

This is the complete list of members for AASequence, including all inherited members.

AASequence()AASequence
AASequence(const AASequence &rhs)AASequence
begin()AASequenceinline
begin() const AASequenceinline
c_term_mod_AASequenceprotected
empty() const AASequence
end()AASequenceinline
end() const AASequenceinline
fromString(const String &s, bool permissive=true)AASequencestatic
fromString(const char *s, bool permissive=true)AASequencestatic
getAAFrequencies(Map< String, Size > &frequency_table) const AASequence
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const AASequence
getCTerminalModification() const AASequence
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) const AASequence
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const AASequence
getNTerminalModification() const AASequence
getPrefix(Size index) const AASequence
getResidue(SignedSize index) const AASequence
getResidue(Size index) const AASequence
getSubsequence(Size index, UInt number) const AASequence
getSuffix(Size index) const AASequence
has(const Residue &residue) const AASequence
hasCTerminalModification() const AASequence
hasNTerminalModification() const AASequence
hasPrefix(const AASequence &peptide) const AASequence
hasSubsequence(const AASequence &peptide) const AASequence
hasSuffix(const AASequence &peptide) const AASequence
isModified() const AASequence
isModified(Size index) const AASequence
n_term_mod_AASequenceprotected
operator!=(const AASequence &rhs) const AASequence
operator+(const AASequence &peptide) const AASequence
operator+(const Residue *residue) const AASequence
operator+=(const AASequence &)AASequence
operator+=(const Residue *)AASequence
operator<(const AASequence &rhs) const AASequence
operator<<(std::ostream &os, const AASequence &peptide)AASequencefriend
operator=(const AASequence &rhs)AASequence
operator==(const AASequence &rhs) const AASequence
operator>>(std::istream &is, const AASequence &peptide)AASequencefriend
operator[](SignedSize index) const AASequence
operator[](Size index) const AASequence
parseModRoundBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas)AASequenceprotectedstatic
parseModSquareBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas)AASequenceprotectedstatic
parseString_(const String &peptide, AASequence &aas, bool permissive=true)AASequenceprotectedstatic
peptide_AASequenceprotected
setCTerminalModification(const String &modification)AASequence
setModification(Size index, const String &modification)AASequence
setNTerminalModification(const String &modification)AASequence
size() const AASequence
toString() const AASequence
toUnmodifiedString() const AASequence
~AASequence()AASequencevirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Fri May 29 2015 17:20:34 using doxygen 1.8.9.1