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i :
Base64::Reinterpreter32_
,
Base64::Reinterpreter64_
,
IsotopeWavelet::fi_
id :
ChromatogramExtractorAlgorithm::ExtractionCoordinates
,
ControlledVocabulary::CVTerm
,
ChromatogramMeta
,
SpectrumMeta
,
IsobaricQuantitationMethod::IsobaricChannelInformation
,
ItraqConstants::ChannelInfo
ID :
MS2Feature
,
MS2Info
id :
QcMLFile::Attachment
,
QcMLFile::QualityParameter
,
Compound
,
Contact
,
CV
,
Instrument
,
Peptide
,
Protein
,
Publication
,
LightPeptide
,
LightProtein
,
OSChromatogramMeta
,
OSSpectrumMeta
,
Peptide
,
Protein
id_ :
Compomer
,
DocumentIdentifier
,
Identification
,
IdentificationHit
,
IdXMLFile
,
MzIdentMLHandler
,
PeptideIdentification
,
ProteinIdentification
,
ResidueModification
,
SpectrumIdentification
id_count :
PeptideAndProteinQuant::PeptideData
,
PeptideAndProteinQuant::ProteinData
id_data_ :
MascotXMLHandler
id_format :
MzTabMSRunMetaData
id_identifier_ :
ConsensusXMLFile
,
FeatureXMLFile
id_tag_support_ :
TOPPBase
id_tagger_ :
TOPPBase
idec :
MzIdentMLDOMHandler::PeptideEvidence
identification_ :
SpectrumSettings
identification_date_ :
ProteinIdentificationVisualizer
identification_threshold_ :
PeptideIdentificationVisualizer
,
ProteinIdentificationVisualizer
identificationview_behavior_ :
TOPPViewBase
identifier :
FASTAFile::FASTAEntry
,
MzTabSmallMoleculeSectionRow
,
ProteinResolver::ResolverResult
identifier_ :
Acquisition
,
CVMappingRule
,
CVReference
,
DocumentIdentifierVisualizer
,
MascotXMLHandler
,
PeptideIdentificationVisualizer
,
ProteinIdentificationVisualizer
identifier_id_ :
ConsensusXMLFile
,
FeatureXMLFile
IDINITIALUNTITLED :
TOPPASBase
idsToRemove :
MS1FeatureMerger
ifs_ :
SpectrumAccessOpenMSCached
ignore_charge_ :
FeatureDistance
,
IDMapper
ignore_update :
SpectraIdentificationViewWidget
im :
RawMSSignalSimulation::ContaminantInfo
in :
TOPPViewBase
in_description_ :
FeatureXMLFile
in_edges_ :
TOPPASVertex
in_ini_section_ :
ToolDescriptionHandler
in_spectrum_list_ :
MzMLHandler< MapType >
inchi_key :
MzTabSmallMoleculeSectionRow
inchi_string_ :
SpectralMatch
include_targets_ :
TargetedExperiment
incomplete_line_ :
LogStreamBuf
incorrectly_assigned_fit_param_ :
PosteriorErrorProbabilityModel
index :
DeNovoIonScoring::IonScore
,
ChromatogramMeta
,
SpectrumMeta
,
PeakCandidate
,
ProteinResolver::ISDGroup
,
ProteinResolver::MSDGroup
,
ProteinResolver::PeptideEntry
,
ProteinResolver::ProteinEntry
,
OSChromatogramMeta
,
OSSpectrumMeta
index_ :
FeatureFinderDefs::NoSuccessor
,
FidHandler
,
SparseVector< Value >::ValueProxy
,
SuffixArraySeqan
index_in_next_spectrum :
MultiplexFiltering::PeakReference
index_in_previous_spectrum :
MultiplexFiltering::PeakReference
index_offset_ :
IndexedMzMLFile
index_to_description_ :
MetaInfoRegistry
index_to_name_ :
MetaInfoRegistry
index_to_unit_ :
MetaInfoRegistry
index_to_value_ :
MetaInfo
indexed_mzml_file_ :
OnDiscMSExperiment< PeakT, ChromatogramPeakT >
indexed_schema_location_ :
MzMLFile
indices_ :
IsotopeWaveletTransform< PeakType >
,
SuffixArrayTrypticCompressed
indis :
ProteinResolver::ProteinEntry
indistinguishable_proteins_ :
ProteinIdentification
individual_intensities_ :
AccurateMassSearchResult
inf_ :
SVOutStream
infile_ :
XTandemInfileXMLHandler
infinity :
FeatureDistance
info_ :
SpectrumCheapDPCorr
info_streams_ :
LogConfigHandler
infty_ :
IntegerMassDecomposer< ValueType, DecompositionValueType >
ini_file_ :
ToolsDialog
ini_location_ :
TOPPBase
init_param_ :
GammaDistributionFitter
,
GaussFitter
,
GumbelDistributionFitter
init_prob_ :
HiddenMarkovModel
init_size_ :
DistanceMatrix< Value >
initializedMaps_ :
SvmTheoreticalSpectrumGenerator
initialTrTolerance_ :
SuperHirnParameters
initIsotopeDist_ :
SuperHirnParameters
inlet_type_ :
IonSource
,
IonSourceVisualizer
input_1_name_ :
FuzzyStringComparator
input_2_name_ :
FuzzyStringComparator
input_combo_ :
ToolsDialog
input_file_ :
FastaIterator
input_filename_ :
OpenSwathTSVWriter
,
XTandemInfile
input_line_1_ :
FuzzyStringComparator
input_line_2_ :
FuzzyStringComparator
input_type :
ProteinResolver::ResolverResult
inside_ :
LinearInterpolation< Key, Value >
inside_0_ :
BilinearInterpolation< Key, Value >
inside_1_ :
BilinearInterpolation< Key, Value >
instance_ :
LogConfigHandler
,
SuperHirnParameters
,
UniqueIdGenerator
instance_number_ :
TOPPBase
instance_ptr_ :
Factory< FactoryProduct >
institution_ :
ContactPerson
,
ContactPersonVisualizer
instrument :
MzTabMetaData
instrument_ :
ExperimentalSettings
,
HPLC
,
InspectInfile
,
MascotInfile
instrument_ref :
Configuration
instrument_settings_ :
ChromatogramSettings
,
SpectrumSettings
instruments_ :
MzMLHandler< MapType >
,
TargetedExperiment
instrumentsettings_polarity_ :
InstrumentSettingsVisualizer
instrumentsettings_scan_mode_ :
InstrumentSettingsVisualizer
int_ :
PrecursorVisualizer
int_32_bit_ :
PeakFileOptions
int_coef :
ConfidenceScoring
int_field_ :
CachedmzML
int_list_ :
DataValue
int_max :
PeakPickerMaxima::PeakCandidate
,
PILISCrossValidation::Option
int_min :
PILISCrossValidation::Option
int_range_ :
RangeManager< D >
int_scale_ :
Spectrum3DOpenGLCanvas
int_stepsize :
PILISCrossValidation::Option
integer_data_arrays_ :
MSChromatogram< PeakT >
,
MSSpectrum< PeakT >
integrated_intensities_ :
PeakPickerMRM
integrated_intensity :
PeakCandidate
intens :
FeatureFinderAlgorithmIsotopeWavelet::BoxElement
,
IsotopeWaveletTransform< PeakType >::BoxElement
intens_signals :
LCElutionPeak
intensIsotopesStDev_ :
ConsensusIsotopePattern
intensities_ :
MultiplexFilterResultPeak
,
MultiplexFilterResultRaw
intensity :
FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
,
FeatureFinderAlgorithmPickedHelperStructs::Seed
,
FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
,
MS1Signal
INTENSITY :
MSPeak
intensity :
OpenSwath_Scores
,
ProteinResolver::MSDGroup
,
ProteinResolver::PeptideEntry
,
RawMSSignalSimulation::ContaminantInfo
intensity_ :
CentroidPeak
,
ChromatogramPeak
,
Peak1D
,
Peak2D
intensity_bin_boarders :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
intensity_bin_values :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
intensity_bins_ :
FeatureFinderAlgorithmPicked
intensity_button_group_ :
IDEvaluationBase
,
TOPPViewBase
intensity_cutoff_ :
MultiplexFiltering
intensity_mode_ :
SpectrumCanvas
intensity_mz_step_ :
FeatureFinderAlgorithmPicked
intensity_percentage_ :
FeatureFinderAlgorithmPicked
intensity_percentage_optional_ :
FeatureFinderAlgorithmPicked
intensity_range_ :
FeatureFileOptions
,
PeakFileOptions
intensity_rt_step_ :
FeatureFinderAlgorithmPicked
intensity_scale_ :
RawMSSignalSimulation
intensity_scale_stddev_ :
RawMSSignalSimulation
intensity_threshold_ :
FeatureFinderAlgorithmIsotopeWavelet
intensity_thresholds_ :
FeatureFinderAlgorithmPicked
intensity_type_ :
FeatureFinderAlgorithmIsotopeWavelet
intensityArea :
MS2Fragment
intensityBinMap :
BackgroundControl
intensityCV_ :
SuperHirnParameters
intensityFloor_ :
SuperHirnParameters
intensityHist_ :
BackgroundIntensityBin
intensityMap_ :
BackgroundIntensityBin
intensityThreshold_ :
SuperHirnParameters
intenstype_ :
IsotopeWaveletTransform< PeakType >
intercept :
ConfidenceScoring
intercept_ :
LinearRegression
,
TransformationModelLinear
intermediate_products_ :
ReactionMonitoringTransition
internal_formula_ :
Residue
interp_ :
TransformationModelInterpolated
interpol_xs_ :
IsotopeWaveletTransform< PeakType >
interpol_ys_ :
IsotopeWaveletTransform< PeakType >
interpolate_precursor_purity_ :
IsobaricChannelExtractor
interpolation_ :
InterpolationModel
interpolation_mode_ :
MultiGradient
interpolation_step_ :
Fitter1D
,
InterpolationModel
interpretation_list_ :
IncludeExcludeTarget
,
TraMLProduct
intlist :
ParamXMLHandler
ints_32 :
MzMLHandlerHelper::BinaryData
ints_64 :
MzMLHandlerHelper::BinaryData
inv_table_steps_ :
IsotopeWavelet
inventory_ :
Factory< FactoryProduct >
,
SingletonRegistry
ion_cutoff_percentage_ :
SequestInfile
ion_detectors_ :
Instrument
ion_mass_tolerance_ :
MascotInfile
ion_mode_ :
AccurateMassSearchEngine
,
MetaboliteSpectralMatching
ion_optics_ :
Instrument
,
InstrumentVisualizer
ion_series_weights_ :
SequestInfile
ion_sources_ :
Instrument
ion_types :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
ionization_method_ :
IonSource
,
IonSourceVisualizer
ionization_type_ :
IonizationSimulation
is_absdiff_small_ :
FuzzyStringComparator
is_active_ :
ChargePair
,
DataFilters
is_at_end_ :
EdwardsLippertIterator
,
FastaIterator
,
TrypticIterator
is_description_ :
XTandemXMLFile
is_end_ :
AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
is_initialized_ :
AccurateMassSearchEngine
is_internal :
ToolDescriptionInternal
is_inverse_orientation_ :
AxisWidget
is_isotope_1_mono :
CompNovoIonScoringBase::IonScore
is_log_ :
AxisWidget
is_modified_ :
Residue
is_ms1_shown_ :
SpectraIdentificationViewWidget
is_number :
FuzzyStringComparator::StreamElement_
is_repeatable_ :
CVMappingTerm
is_result_valid_ :
SignalToNoiseEstimator< Container >
is_running_ :
StopWatch
is_space :
FuzzyStringComparator::StreamElement_
is_status_success_ :
FuzzyStringComparator
is_swapped_ :
Spectrum1DCanvas
isd_group :
ProteinResolver::MSDGroup
,
ProteinResolver::PeptideEntry
,
ProteinResolver::ProteinEntry
isds :
ProteinResolver::ResolverResult
iso_ :
MassAnalyzerVisualizer
iso_map_ :
TwoDOptimization
iso_map_iter :
TwoDOptimization::Data
iso_number_ms2_negative :
IsobaricQuantifierStatistics
,
ItraqQuantifier::ItraqQuantifierStats
iso_number_reporter_different :
IsobaricQuantifierStatistics
,
ItraqQuantifier::ItraqQuantifierStats
iso_number_reporter_negative :
IsobaricQuantifierStatistics
,
ItraqQuantifier::ItraqQuantifierStats
iso_pattern_ :
FeatureHypothesis
iso_similarity_ :
AccurateMassSearchEngine
iso_solution_different_intensity :
IsobaricQuantifierStatistics
,
ItraqQuantifier::ItraqQuantifierStats
iso_total_intensity_negative :
IsobaricQuantifierStatistics
,
ItraqQuantifier::ItraqQuantifierStats
isolation_width_ :
MassAnalyzer
ISOPEAKS :
MSPeak
isotope_correction_enabled_ :
IsobaricQuantifier
isotope_corrections_ :
ITRAQLabeler
,
ItraqQuantifier
isotope_correlation :
OpenSwath_Scores
isotope_distance_ :
ExtendedIsotopeModel
,
IsotopeModel
isotope_distribution_ :
IsotopeModel
isotope_distributions_ :
CompNovoIdentificationBase
,
CompNovoIonScoringBase
,
FeatureFinderAlgorithmPicked
,
IsotopeDistributionCache
isotope_filt_svm_ :
FeatureFindingMetabo
isotope_lorentz_fwhm_ :
IsotopeModel
isotope_model_ :
FeatureFindingMetabo
isotope_overlap :
OpenSwath_Scores
isotope_stdev_ :
ExtendedIsotopeFitter1D
,
ExtendedIsotopeModel
,
IsotopeFitter1D
,
IsotopeModel
ISOTOPECORRECTIONS_EIGHTPLEX :
ItraqConstants
ISOTOPECORRECTIONS_FOURPLEX :
ItraqConstants
ISOTOPECORRECTIONS_TMT_SIXPLEX :
ItraqConstants
isotopePattern :
LCElutionPeak
isotopes_ :
Element
,
IMSElement
isotopes_sim_score_ :
AccurateMassSearchResult
isotopesTrace_ :
ConsensusIsotopePattern
isotopicPeaks_ :
DeconvPeak
isotopIdx_ :
CentroidPeak
it_ :
ConsensusXMLFile
,
FastaIteratorIntern
,
SuffixArraySeqan
itemenclosed_ :
CsvFile
itemseperator_ :
CsvFile
itraq_type_ :
ItraqChannelExtractor
,
ITRAQLabeler
,
ItraqQuantifier
OpenMS / TOPP release 2.0.0
Documentation generated on Fri May 29 2015 17:21:28 using doxygen 1.8.9.1