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Residue Member List

This is the complete list of members for Residue, including all inherited members.

addLossFormula(const EmpiricalFormula &)Residue
addLossName(const String &name)Residue
addNTermLossFormula(const EmpiricalFormula &)Residue
addNTermLossName(const String &name)Residue
addResidueSet(const String &residue_sets)Residue
addSynonym(const String &synonym)Residue
AIon enum valueResidue
average_weight_Residueprotected
BIon enum valueResidue
CIon enum valueResidue
CIonMinusOne enum valueResidue
CIonPlusOne enum valueResidue
CIonPlusTwo enum valueResidue
CTerminal enum valueResidue
formula_Residueprotected
Full enum valueResidue
gb_bb_l_Residueprotected
gb_bb_r_Residueprotected
gb_sc_Residueprotected
getAIonToFull()Residueinlinestatic
getAIonToFullAverageWeight()Residueinlinestatic
getAIonToFullMonoWeight()Residueinlinestatic
getAverageWeight(ResidueType res_type=Full) const Residue
getBackboneBasicityLeft() const Residue
getBackboneBasicityRight() const Residue
getBIonToFull()Residueinlinestatic
getBIonToFullAverageWeight()Residueinlinestatic
getBIonToFullMonoWeight()Residueinlinestatic
getCIonMinusOneToFull()Residueinlinestatic
getCIonMinusOneToFullAverageWeight()Residueinlinestatic
getCIonMinusOneToFullMonoWeight()Residueinlinestatic
getCIonPlusOneToFull()Residueinlinestatic
getCIonPlusOneToFullAverageWeight()Residueinlinestatic
getCIonPlusOneToFullMonoWeight()Residueinlinestatic
getCIonPlusTwoToFull()Residueinlinestatic
getCIonPlusTwoToFullAverageWeight()Residueinlinestatic
getCIonPlusTwoToFullMonoWeight()Residueinlinestatic
getCIonToFull()Residueinlinestatic
getCIonToFullAverageWeight()Residueinlinestatic
getCIonToFullMonoWeight()Residueinlinestatic
getCTerminalToFull()Residueinlinestatic
getCTerminalToFullAverageWeight()Residueinlinestatic
getCTerminalToFullMonoWeight()Residueinlinestatic
getFormula(ResidueType res_type=Full) const Residue
getInternalToFull()Residueinlinestatic
getInternalToFullAverageWeight()Residueinlinestatic
getInternalToFullMonoWeight()Residueinlinestatic
getLossFormulas() const Residue
getLossNames() const Residue
getLowMassIons() const Residue
getModification() const Residue
getMonoWeight(ResidueType res_type=Full) const Residue
getName() const Residue
getNTerminalToFull()Residueinlinestatic
getNTerminalToFullAverageWeight()Residueinlinestatic
getNTerminalToFullMonoWeight()Residueinlinestatic
getNTermLossFormulas() const Residue
getNTermLossNames() const Residue
getOneLetterCode() const Residue
getPiValue() const Residue
getPka() const Residue
getPkb() const Residue
getPkc() const Residue
getResidueSets() const Residue
getResidueTypeName(const ResidueType res_type)Residuestatic
getShortName() const Residue
getSideChainBasicity() const Residue
getSynonyms() const Residue
getThreeLetterCode() const Residue
getXIonToFull()Residueinlinestatic
getXIonToFullAverageWeight()Residueinlinestatic
getXIonToFullMonoWeight()Residueinlinestatic
getYIonToFull()Residueinlinestatic
getYIonToFullAverageWeight()Residueinlinestatic
getYIonToFullMonoWeight()Residueinlinestatic
getZIonMinusOneToFull()Residueinlinestatic
getZIonMinusOneToFullAverageWeight()Residueinlinestatic
getZIonMinusOneToFullMonoWeight()Residueinlinestatic
getZIonPlusOneToFull()Residueinlinestatic
getZIonPlusOneToFullAverageWeight()Residueinlinestatic
getZIonPlusOneToFullMonoWeight()Residueinlinestatic
getZIonPlusTwoToFull()Residueinlinestatic
getZIonPlusTwoToFullAverageWeight()Residueinlinestatic
getZIonPlusTwoToFullMonoWeight()Residueinlinestatic
getZIonToFull()Residueinlinestatic
getZIonToFullAverageWeight()Residueinlinestatic
getZIonToFullMonoWeight()Residueinlinestatic
hasNeutralLoss() const Residue
hasNTermNeutralLosses() const Residue
Internal enum valueResidue
internal_formula_Residueprotected
is_modified_Residueprotected
isInResidueSet(const String &residue_set)Residue
isModified() const Residue
loss_average_weight_Residueprotected
loss_formulas_Residueprotected
loss_mono_weight_Residueprotected
loss_names_Residueprotected
low_mass_ions_Residueprotected
modification_Residueprotected
mono_weight_Residueprotected
name_Residueprotected
NTerm_loss_formulas_Residueprotected
NTerm_loss_names_Residueprotected
NTerminal enum valueResidue
one_letter_code_Residueprotected
operator!=(const Residue &residue) const Residue
operator!=(char one_letter_code) const Residue
operator<<(std::ostream &os, const Residue &residue)Residuefriend
operator=(const Residue &residue)Residue
operator==(const Residue &residue) const Residue
operator==(char one_letter_code) const Residue
pka_Residueprotected
pkb_Residueprotected
pkc_Residueprotected
pre_mod_name_Residueprotected
Residue()Residue
Residue(const Residue &residue)Residue
Residue(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula)Residue
residue_sets_Residueprotected
ResidueType enum nameResidue
setAverageWeight(double weight)Residue
setBackboneBasicityLeft(double gb_bb_l)Residue
setBackboneBasicityRight(double gb_bb_r)Residue
setFormula(const EmpiricalFormula &formula)Residue
setLossFormulas(const std::vector< EmpiricalFormula > &)Residue
setLossNames(const std::vector< String > &name)Residue
setLowMassIons(const std::vector< EmpiricalFormula > &low_mass_ions)Residue
setModification(const String &name)Residue
setMonoWeight(double weight)Residue
setName(const String &name)Residue
setNTermLossFormulas(const std::vector< EmpiricalFormula > &)Residue
setNTermLossNames(const std::vector< String > &name)Residue
setOneLetterCode(const String &one_letter_code)Residue
setPka(double value)Residue
setPkb(double value)Residue
setPkc(double value)Residue
setResidueSets(const std::set< String > &residues_sets)Residue
setShortName(const String &short_name)Residue
setSideChainBasicity(double gb_sc)Residue
setSynonyms(const std::set< String > &synonyms)Residue
setThreeLetterCode(const String &three_letter_code)Residue
short_name_Residueprotected
SizeOfResidueType enum valueResidue
synonyms_Residueprotected
three_letter_code_Residueprotected
XIon enum valueResidue
YIon enum valueResidue
ZIon enum valueResidue
ZIonMinusOne enum valueResidue
ZIonPlusOne enum valueResidue
ZIonPlusTwo enum valueResidue
~Residue()Residuevirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Fri May 29 2015 17:20:43 using doxygen 1.8.9.1