org.jmol.api
Interface JmolEdge

All Known Implementing Classes:
Bond, HBond, SmilesBond

public interface JmolEdge


Field Summary
static int BOND_AROMATIC
           
static int BOND_AROMATIC_DOUBLE
           
static int BOND_AROMATIC_MASK
           
static int BOND_AROMATIC_SINGLE
           
static int BOND_COVALENT_DOUBLE
           
static int BOND_COVALENT_MASK
           
static int BOND_COVALENT_QUADRUPLE
           
static int BOND_COVALENT_SINGLE
           
static int BOND_COVALENT_TRIPLE
           
static int BOND_H_CALC
           
static int BOND_H_CALC_MASK
           
static int BOND_H_MINUS_3
           
static int BOND_H_MINUS_4
           
static int BOND_H_NUCLEOTIDE
           
static int BOND_H_PLUS_2
           
static int BOND_H_PLUS_3
           
static int BOND_H_PLUS_4
           
static int BOND_H_PLUS_5
           
static int BOND_H_REGULAR
           
static int BOND_HBOND_SHIFT
           
static int BOND_HYDROGEN_MASK
           
static int BOND_NEW
           
static int BOND_ORDER_ANY
           
static int BOND_ORDER_NULL
           
static int BOND_ORDER_UNSPECIFIED
           
static int BOND_PARTIAL_MASK
           
static int BOND_PARTIAL01
           
static int BOND_PARTIAL12
           
static int BOND_PARTIAL23
           
static int BOND_PARTIAL32
           
static int BOND_STEREO_FAR
           
static int BOND_STEREO_MASK
          Extended Bond Definition Types
static int BOND_STEREO_NEAR
           
static int BOND_STRUT
           
static int BOND_SULFUR_MASK
           
 
Method Summary
 int getAtomIndex1()
           
 int getAtomIndex2()
           
 int getCovalentOrder()
           
 int getIndex()
           
 int getOrder()
           
 JmolNode getOtherAtom(JmolNode atom)
           
 boolean isCovalent()
           
 boolean isHydrogen()
           
 

Field Detail

BOND_STEREO_MASK

static final int BOND_STEREO_MASK
Extended Bond Definition Types

See Also:
Constant Field Values

BOND_STEREO_NEAR

static final int BOND_STEREO_NEAR
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BOND_STEREO_FAR

static final int BOND_STEREO_FAR
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BOND_AROMATIC_MASK

static final int BOND_AROMATIC_MASK
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BOND_AROMATIC_SINGLE

static final int BOND_AROMATIC_SINGLE
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BOND_AROMATIC_DOUBLE

static final int BOND_AROMATIC_DOUBLE
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BOND_AROMATIC

static final int BOND_AROMATIC
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BOND_SULFUR_MASK

static final int BOND_SULFUR_MASK
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BOND_PARTIAL_MASK

static final int BOND_PARTIAL_MASK
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BOND_PARTIAL01

static final int BOND_PARTIAL01
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BOND_PARTIAL12

static final int BOND_PARTIAL12
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BOND_PARTIAL23

static final int BOND_PARTIAL23
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BOND_PARTIAL32

static final int BOND_PARTIAL32
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BOND_COVALENT_MASK

static final int BOND_COVALENT_MASK
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BOND_COVALENT_SINGLE

static final int BOND_COVALENT_SINGLE
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BOND_COVALENT_DOUBLE

static final int BOND_COVALENT_DOUBLE
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BOND_COVALENT_TRIPLE

static final int BOND_COVALENT_TRIPLE
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BOND_COVALENT_QUADRUPLE

static final int BOND_COVALENT_QUADRUPLE
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BOND_ORDER_UNSPECIFIED

static final int BOND_ORDER_UNSPECIFIED
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BOND_ORDER_ANY

static final int BOND_ORDER_ANY
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BOND_ORDER_NULL

static final int BOND_ORDER_NULL
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BOND_NEW

static final int BOND_NEW
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BOND_STRUT

static final int BOND_STRUT
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BOND_HBOND_SHIFT

static final int BOND_HBOND_SHIFT
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BOND_HYDROGEN_MASK

static final int BOND_HYDROGEN_MASK
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BOND_H_REGULAR

static final int BOND_H_REGULAR
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BOND_H_CALC_MASK

static final int BOND_H_CALC_MASK
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BOND_H_CALC

static final int BOND_H_CALC
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BOND_H_PLUS_2

static final int BOND_H_PLUS_2
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BOND_H_PLUS_3

static final int BOND_H_PLUS_3
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BOND_H_PLUS_4

static final int BOND_H_PLUS_4
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BOND_H_PLUS_5

static final int BOND_H_PLUS_5
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BOND_H_MINUS_3

static final int BOND_H_MINUS_3
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BOND_H_MINUS_4

static final int BOND_H_MINUS_4
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BOND_H_NUCLEOTIDE

static final int BOND_H_NUCLEOTIDE
See Also:
Constant Field Values
Method Detail

getIndex

int getIndex()

getAtomIndex1

int getAtomIndex1()

getAtomIndex2

int getAtomIndex2()

getCovalentOrder

int getCovalentOrder()

getOrder

int getOrder()

getOtherAtom

JmolNode getOtherAtom(JmolNode atom)

isCovalent

boolean isCovalent()

isHydrogen

boolean isHydrogen()