Class | Description |
---|---|
CifReader |
A true line-free CIF file reader for CIF files.
|
MessagePackReader |
A simple MessagePack reader.
|
MMCifReader |
mmCIF files are recognized prior to class creation.
|
MMCifValidationParser | |
MMTFReader |
JmolData RCSB MMTF (macromolecular transmission format) file reader
see https://github.com/rcsb/mmtf/blob/master/spec.md
/full/ specification as of 2016.4.18 is implemented,including:
reading atoms, bonds, and DSSR secondary structure
load =1f88.mmtf
reading space groups and unit cells, and using those as per other readers
load =1crn.mmtf {1 1 1}
reading bioassemblies (biomolecules) and applying those transformations
load =1auy.mmtf FILTER "biomolecule 1;*.CA,*.P"
reading biomolecules and lattices, and loading course-grained
load =1auy.mmtf {2 2 1} filter "biomolecule 1;bychain";spacefill 30.0; color property symop
Note that the filter "DSSP1" indicates that mmtf included DSSP 1.0 calculation should be used.
|
MSCifRdr | |
MSRdr |
generalized modulated structure reader class for CIF and Jana
-- includes Fourier, Crenel, Sawtooth; displacement, occupancy, and Uij
-- handles up to 6 modulation wave vectors
-- commensurate and incommensurate, including composites
-- not handling _cell_commen_t_section_1
|
Subsystem |